- Virology.ca Tools
- Virus Wiki
Here is a list of our tools as well as a brief description.
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|VOCS – search and extract genome, gene and protein data from the database.||VGO – an easy-to-use Java genome browser.|
|Base By Base – search and extract genome, gene and protein data from the database.||JDotter – generate dot-plots for large genome or protein sequences|
|Sequence Searcher – search for protein and DNA motifs||GATU (Genome Annotation Transfer Utility) – annotates a genome based on closely related reference genomes|
|STS – Java program for building and exploring indexes of small or large amounts of DNA data.||NAP (Nucleotide Amino Acid Alignment) – global DNA/protein alignments without penalizing terminal gaps|
|GFS (Genome-based Fingerprint Scanning) – maps peptide mass fingerprint data into raw genomic sequences||GraphDNA – DNA Skew Graphing|
CodonStatistics – browse statistical information on one or more genomes
|Hydrophobicity – graph amino acid hydrophobicity/hydrophilicity|
|j-CODEHOP – design COnsensus DEgenerate Hybrid Oligonucleotide Primers (CODEHOPs) from amino acid sequence alignments||JFreq (Java Word Frequences) – finds frequencies of short nucleotide sequences|